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Dr. Daria Berdnikova


Dr. Daria V. Berdnikova

Organic Chemistry II
University of Siegen
Adolf-Reichwein-Str. 2
57076 Siegen
Phone: +49 (0) 271 / 740 - 2015

Fax: +49 (0) 271 / 740 - 4052
-Mail: berdnikova@chemie-bio.uni-siegen.de




Laufende Projekte

Synthese, Photoschaltung und RNA-Bindungseigenschaften der Konjugate von Aminoglycosiden und 2-Desoxystreptamin mit Hemi-Indigo-Typ Photochromen

Deutsche Forschungsgemeinschaft (DFG) - Projektnummer 437120393

Curriculum Vitæ




1987, Moscow, Russia




D. I. Mendeleev University of Chemical Technology of Russia, Moscow, Russia (2004-2009)


Diploma, Engineer with specialty in “Nanomaterials” (with distinction)


A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, Moscow, Russia (2009-2012)


PhD in Organic and Physical Chemistry

Thesis advisors:

Prof. Olga Fedorova, Dr. Yuri Fedorov


University of Siegen (09/2013-02/2014)


Postdoctoral Fellow


Prof. Dr. Heiko Ihmels




A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, Moscow, Russia


Laboratory assistant, Scientific engineer, Research scientist, Senior researcher


Peoples' Friendship University of Russia, Moscow, Russia


Junior researcher


University of Siegen


Postdoctoral research associate (Marie Skłodowska-Curie Individual Fellowship and EaSE-2020 funding)


University of Siegen


Leader of the junior research group (Nachwuchsgruppenleiterin)




Medal "For the best scientific work" for the Diploma project, awarded by the Ministry of Education and Science of the Russian Federation


DAAD Scholarship


Russian Foundation for Basic Research, Fellowship "My first grant"


EU Horizon 2020, Marie Skłodowska-Curie Individual Fellowship


EaSE-2020 funding (University of Siegen)


Deutsche Forschungsgemeinschaft



1.       D. V. Berdnikova*, S. Steup, M. Bolte, M. Suta, Chem. Eur. J. 2023, 29, e202300356.

Design of aurone-based dual-state emissive (DSE) fluorophores

2.       D. V. Berdnikova*, E. Y. Chernikova, ChemPhotoChem 2023, e202300140 [Review].

Fluorescence and phosphorescence energy transfer in cucurbituril-based supramolecular systems

3.       J. Schlosser, J. F. M. Hebborn, D. V. Berdnikova, H. Ihmels, Chemistry 2023, 5, 1220–1232.

Selective fluorimetric detection of pyrimidine nucleotides in neutral aqueous solution with a styrylpyridine-based cyclophane


4.       D. V. Berdnikova*, B. M. Kriesche, T. Paululat, T. S. Hofer, Chem. Eur. J. 2022, 28, e202202752.

Fused bis(hemi-indigo): broad-range wavelength-independent photoswitches


5.      D. V. Berdnikova*, Chem. Commun. 2021, 57, 10819–10826 [Highlight article].

Photoswitches for controllable RNA binding: a future approach in the RNA-targeting therapy

6.      T. Paululat, M. Rabe, D. V. Berdnikova, J. Magn. Reson. 2021, 327, 106990.

Modification of an NMR probe for monitoring of photoreactions

Front Cover

7.      D. V. Berdnikova, P. Carloni, S. Krauß, G. Rossetti, Molecules 2021, 26, 3384 [Review, a part of the special issue “RNA: still an under-exploited drug target”].

Role and perspective of molecular simulation-based investigation of RNA–ligand interaction: from small molecules and peptides to photoswitchable RNA binding


8.      E. Y. Chernikova*, D. V. Berdnikova*, Chem. Commun. 2020, 56, 15360–15376 [Highlight article, a part of the themed collection “Chemical Communications HOT Articles”].

Cucurbiturils in nucleic acids research

9.      E. Y. Chernikova, D. V. Berdnikova, A. S. Peregudov, O. A. Fedorova, Y. V. Fedorov, ChemPhysChem 2020, 21, 442–449.

Encapsulationcontrolled photoisomerization of a styryl derivative: stereoselective formation of the anti Zisomer in the cucurbit[7]uril cavity

10.      D. V. Berdnikova, J. Heider, H. Ihmels, N. Sewald, P. M. Pithan, ChemPhotoChem 2020, 4, 520–525.

Photoinduced release of DNAbinding ligands from the [4+4] dimers of benzo[b]quinolizinium and anthracene derivatives

11.      J. Becher, D. V. Berdnikova, H. Ihmels, C. Stremmel, Beilstein J. Org. Chem. 2020, 16, 2795–2806 [a part of the thematic issue “Molecular recognition”].

Synthesis and investigation of quadruplex-DNA-binding, 9-O-substituted berberine derivatives


12.      D. V. Berdnikova*, Chem. Commun. 2019, 55, 8402–8405.

Visible-range hemi-indigo photoswitch: ON–OFF fluorescent binder for HIV‑1 RNA

13.      D. V. Berdnikova*, Beilstein J. Org. Chem. 2019, 15, 2822–2829 [a part of the special issue “Molecular switches”].

Design, synthesis and investigation of water-soluble hemiindigo photoswitches for bioapplications


14.   D. V. Berdnikova*, N. I. Sosnin, O. A. Fedorova, H. Ihmels, Org. Biomol. Chem. 2018, 16, 545–554.

Governing the DNA-binding mode of styryl dyes by the length of their alkyl substituents – from intercalation to major groove binding

15.   D. V. Berdnikova*, Y. V. Fedorov, O. A. Fedorova, G. Jonusauskas, Dyes Pigm2018, 151, 227–232.

Supramolecular tuning of energy transfer efficiency and direction in a bis(styryl) dye–crown ether conjugate

16.   M. A. Ustimova, A. Y. Lebedeva, Y. V. Fedorov, D. V. Berdnikova, O. A. Fedorova, New J. Chem. 2018, 42, 7908–7913.

FRET‑based metal ion sensing by a crown-containing bisstyryl dye


17.   D. V. Berdnikova*, T. Paululat, G. Jonusauskas, S. M. Peregudova, O. A. Fedorova, Org. Lett. 2017, 19, 5633–5636.

Protonation-gated dual photochromism of a chromene–styryl dye hybrid

18.   D. V. Berdnikova*, T. M. Aliyeu, S. Delbaere, Y. V. Fedorov, G. Jonusauskas, V. V. Novikov, A. A. Pavlov, A. S. Peregudov, N. E. Shepel', F. I. Zubkov, О. A. Fedorova, Dyes Pigm. 2017, 139, 397–402.

Regio- and stereoselective [2+2] photocycloaddition in Ba2+ templated supramolecular dimers of styryl-derivatized aza-heterocycles

19.   E. Y. Chernikova, D. V. Berdnikova, Y. V. Fedorov, O. A. Fedorova, F. Maurel, G. Jonusauskas, Phys. Chem. Chem. Phys. 2017,19, 25834–25839 [a part of the themed collection “2017 PCCP HOT Articles”].

Light-induced piston nanoengines: ultrafast shuttling of a styryl dye inside cucurbit[7]uril

20.   J. Becher, D. V. Berdnikova, D. Dzubiel, H. Ihmels, P. M. Pithan, Beilstein J. Org. Chem. 2017, 13, 203–212.

Interactions between photoacidic 3‑hydroxynaphtho[1,2-b]quinolizinium and cucurbit[7]uril: Influence on acidity in the ground and excited state


21.   T. M. Aliyeu, D. V. Berdnikova*, O. A. Fedorova, E. N. Gulakova, C. Stremmel, H. Ihmels, J. Org. Chem. 2016, 81, 9075–9085.

Regiospecific photocyclization of mono- and bis-styryl-substituted N-heterocycles: a synthesis of DNA-binding benzo[c]quinolizinium derivatives


22.   D. V. Berdnikova*, T. M. Aliyeu, T. Paululat, Y. V. Fedorov, O. A. Fedorova, H. Ihmels, Chem. Commun. 2015, 51, 4906–4909.

DNA–ligand interactions gained and lost: light-induced ligand redistribution in a supramolecular cascade

23.   D. V. Berdnikova, H. Ihmels, H. Schönherr, M. Steuber, D. Wesner, Org. Biomol. Chem. 2015, 13, 3766–3770.

Photoinduced formation of stable Ag-nanoparticles from a ternary ligand-DNA-Ag+ complex

24.   D. V. Berdnikova, O. A. Fedorova, E. V. Tulyakova, H. Li, S. Kölsch, H. Ihmels, Photochem. Photobiol. 2015, 91, 723–731 [a part of the special issue dedicated to the memory of Michael Kasha].

Interaction of crown ether-annelated styryl dyes with double-stranded DNA


25.   E. N. Gulakova, D. V. Berdnikova*, T. M. Aliyeu, Y. V. Fedorov, I. A. Godovikov, O. A. Fedorova, J. Org. Chem. 2014, 79, 5533–5537.

Regiospecific C–N photocyclization of 2-styrylquinolines


26.   D. V. Berdnikova*, Y. V. Fedorov, O. A. Fedorova, Dyes Pigm. 2013, 96, 287–295.

Azadithiacrown ether based ditopic receptors capable of simultaneous multi-ionic recognition of Ag+ and Hg2+

27.   E. Y. Chernikova, D. V. Berdnikova, Y. V. Fedorov, O. A. Fedorova, Macroheterocycles 2013, 6, 234–239.

Effective stabilization of cis-isomer of styryl dye inside the cucurbit[7]uril cavity


28.   D. Berdnikova, O. Fedorova, E. Gulakova, H. Ihmels, Chem. Commun. 2012, 48, 4603–4605.

Photoinduced in situ generation of a DNA‑binding benzothiazoloquinolinium derivative

29.   E. Chernikova, D. Berdnikova, Y. Fedorov, O. Fedorova, A. Peregudov, L. Isaacs, Chem. Commun. 2012, 48, 7256–7258.

Self‑assembly of a ternary architecture driven by cooperative Hg2+ ion binding between cucurbut[7]uril and crown ether macrocyclic hosts


30.   M. Y. Koroleva, D. V. Berdnikova, B. V. Spitsyn, E. V. Yurtov, Theor. Found. Chem. Eng. 2009, 43, 478–481.

Sedimentation stability of aqueous dispersions of nanodiamond agglomerates

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